Publications

Billingsley P.F, Richie T.L, Abdulla S, Ondo'o Ayekaba M, Daubenberger C.A, Garcia G.A, Hoffman S.L. A paradigm for Africa-centric vaccine development in Equatorial Guinea. Trends Parasitol. 2024;40(5):362-366. DOI: 10.1016/j.pt.2024.03.005

Daubenberger C.A, Silva J.C. First-generation malaria vaccine successfully implemented in three African countries. Lancet. 2024;403(10437):1607-1609. DOI: 10.1016/s0140-6736(23)02892-1

Foglierini M, Nortier P, Schelling R, Winiger R.R, Jacquet P, O'Dell S, Demurtas D, Mpina M, Lweno O, Muller Y.D, Petrovas C, Daubenberger C, Perreau M, Doria-Rose N.A, Gottardo R, Perez L. RAIN: machine learning-based identification for HIV-1 bNAbs. Nat Commun. 2024;15:5339. DOI: 10.1038/s41467-024-49676-1

Hosch S, Wagner P, Giger J.N, Dubach N, Saavedra E, Perno C.F, Gody J.C, Pagonendji M.S, Ngoagouni C, Ndoua C, Nsanzabana C, Vickos U, Daubenberger C, Schindler T. PHARE: a bioinformatics pipeline for compositional profiling of multiclonal Plasmodium falciparum infections from long-read Nanopore sequencing data. J Antimicrob Chemother. 2024;79(5):987-996. DOI: 10.1093/jac/dkae060

Jongo S, Church L.W.P, Milando F, Qassim M, Schindler T, Rashid M, Tumbo A, Nyaulingo G, Bakari B.M, Athuman Mbaga T, Mohamed L, Kassimu K, Simon B.S, Mpina M, Zaidi I, Duffy P.E, Swanson Ii P.A, Seder R, Herman J.D, Mendu M, Zur Y, Alter G, Kc N, Riyahi P, Abebe Y, Murshedkar T, James E.R, Billingsley P.F, Sim B.K.L, Richie T.L, Daubenberger C, Abdulla S, Hoffman S.L. Safety and protective efficacy of PfSPZ vaccine administered to HIV negative and positive Tanzanian adults. J Clin Invest. 2024;134(6):e169060. DOI: 10.1172/jci169060

Macià D, Campo J.J, Jairoce C, Mpina M, Sorgho H, Dosoo D, Agnandji S.T, Kusi K.A, Molinos-Albert L.M, Kariuki S, Daubenberger C, Mordmüller B, Moncunill G, Dobaño C. The effect of Plasmodium falciparum exposure and maternal anti-circumsporozoite protein antibodies on responses to RTS,S/AS01E vaccination in infants and children: an ancillary observational immunological study to a phase 3, randomised clinical t. Lancet Infect Dis. 2024(in press). DOI: 10.1016/s1473-3099(24)00527-9

Masoud N.S, Knopp S, Lenz N, Lweno O, Abdul Kibondo U, Mohamed A, Schindler T, Rothen J, Masimba J, S, Althaus F, Abdulla S, Tanner M, Daubenberger C, Genton B. The impact of soil transmitted helminth on malaria clinical presentation and treatment outcome: a case control study among children in Bagamoyo district, coastal region of Tanzania. PLoS Negl Trop Dis. 2024;18(8):e0012412. DOI: 10.1371/journal.pntd.0012412

Mitchell R.A, Macià D, Jairoce C, Mpina M, Naidu A, Chopo-Pizarro A, Vázquez-Santiago M, Campo J.J, Aide P, Aguilar R, Daubenberger C, Dobaño C, Moncunill G. Effect of RTS,S/AS01E vaccine booster dose on cellular immune responses in African infants and children. NPJ Vaccines. 2024;9:200. DOI: 10.1038/s41541-024-00977-y

Ren Y, Li C, Nanayakkara Sapugahawatte D, Zhu C, Spänig S, Jamrozy D, Rothen J, Daubenberger C.A, Bentley S.D, Ip M, Heider D. Predicting hosts and cross-species transmission of Streptococcus agalactiae by interpretable machine learning. Comput Biol Med. 2024;171:108185. DOI: 10.1016/j.compbiomed.2024.108185

Thomson-Luque R, Stabler T.C, Fürle K, Silva J.C, Daubenberger C. Plasmodium falciparum merozoite surface protein 1 as asexual blood stage malaria vaccine candidate. Expert Rev Vaccines. 2024;23(1):160-173. DOI: 10.1080/14760584.2023.2295430

Tumbo A, Lorenz F.R, Yang A.S.P, Sefried S, Schindler T, Mpina M, Dangy J.P, Milando F.A, Rashid M.A, Nyaulingo G, Ramadhani K, Jongo S, Felgner P.L, Abebe Y, Sim B.K.L, Church L.W.P, Richie T.L, Billingsley P.F, Murshedkar T, Hoffman S.L, Abdulla S, Kremsner P.G, Mordmüller B, Daubenberger C, Fendel R. PfSPZ Vaccine induces focused humoral immune response in HIV positive and negative Tanzanian adults. EBioMedicine. 2024;108:105364. DOI: 10.1016/j.ebiom.2024.105364

Abukhattab S, Hosch S, Abu-Rmeileh N.M.E, Hasan S, Vonäsch P, Crump L, Hattendorf J, Daubenberger C, Zinsstag J, Schindler T. Whole-genome sequencing for One Health surveillance of antimicrobial resistance in conflict zones: a case study of Salmonella spp. and Campylobacter spp. in the West Bank, Palestine. Appl Environ Microbiol. 2023;89(9):e00658-23. DOI: 10.1128/aem.00658-23

Banga R, Procopio F.A, Lana E, Gladkov G.T, Roseto I, Parsons E.M, Lian X, Armani-Tourret M, Bellefroid M, Gao C, Kauzlaric A, Foglierini M, Alfageme-Abello O, Sluka S.H.M, Munoz O, Mastrangelo A, Fenwick C, Muller Y, Mkindi C.G, Daubenberger C, Cavassini M, Trunfio R, Déglise S, Corpataux J.M, Delorenzi M, Lichterfeld M, Pantaleo G, Perreau M. Lymph node dendritic cells harbor inducible replication-competent HIV despite years of suppressive ART. Cell Host Microbe. 2023;31(10):1714-1731. DOI: 10.1016/j.chom.2023.08.020

Bechtold P, Wagner P, Hosch S, Gregorini M, Stark W.J, Gody J.C, Kodia-Lenguetama E.R, Pagonendji M.S, Donfack O.T, Phiri W.P, García G.A, Nsanzabana C, Daubenberger C.A, Schindler T, Vickos U. Development and evaluation of PlasmoPod: a cartridge-based nucleic acid amplification test for rapid malaria diagnosis and surveillance. PLOS Glob Public Health. 2023;3(9):e0001516. DOI: 10.1371/journal.pgph.0001516

Daubenberger C. Genetically modified malaria parasites as vaccine candidates. Trends Mol Med. 2023;29(1):1-3. DOI: 10.1016/j.molmed.2022.11.005

Jongo S.A, Urbano Nsue Ndong Nchama V, Church L.W.P, Olotu A, Manock S.R, Schindler T, Mtoro A, Kc N, Devinsky O, Zan E, Hamad A, Nyakarungu E, Mpina M, Deal A, Bijeri J.R, Ondo Mangue M.E, Ntutumu Pasialo B.E, Nguema G.N, Rivas M.R, Chemba M, Ramadhani K.K, James E.R, Stabler T.C, Abebe Y, Riyahi P, Saverino E.S, Sax J, Hosch S, Tumbo A, Gondwe L, Segura J.L, Falla C.C, Phiri W.P, Hergott D.E.B, García G.A, Maas C, Murshedkar T, Billingsley P.F, Tanner M, Ayekaba M.O, Sim B.K.L, Daubenberger C, Richie T.L, Abdulla S, Hoffman S.L. Safety and immunogenicity of radiation-attenuated PfSPZ vaccine in equatoguinean infants, children, and adults. Am J Trop Med Hyg. 2023;109(1):138-146. DOI: 10.4269/ajtmh.22-0773

Richie T.L, Church L.W.P, Murshedkar T, Billingsley P.F, James E.R, Chen M.C, Abebe Y, Natasha Kc, Chakravarty S, Dolberg D, Healy S.A, Diawara H, Sissoko M.S, Sagara I, Cook D.M, Epstein J.E, Mordmüller B, Kapulu M, Kreidenweiss A, Franke-Fayard B, Agnandji S.T, López Mikue M.A, McCall M.B.B, Steinhardt L, Oneko M, Olotu A, Vaughan A.M, Kublin J.G, Murphy S.C, Jongo S, Tanner M, Sirima S.B, Laurens M.B, Daubenberger C, Silva J.C, Lyke K.E, Janse C.J, Roestenberg M, Sauerwein R.W, Abdulla S, Dicko A, Kappe S.H.I, Sim B.K.L, Duffy P.E, Kremsner P.G, Hoffman S.L. Sporozoite immunization: innovative translational science to support the fight against malaria. Expert Rev Vaccines. 2023;22(1):964-1007. DOI: 10.1080/14760584.2023.2245890

Daubenberger C, Burrows J.N. Volunteer infection studies accelerate the clinical development of novel drugs against malaria. Lancet Infect Dis. 2022;22(6):753-754. DOI: 10.1016/S1473-3099(21)00679-4

Daubenberger C. Assessment of experimental malaria vaccine induced protection in pre-exposed populations. Lancet Infect Dis. 2022;22(3):305-307. DOI: 10.1016/S1473-3099(21)00359-5

Daubenberger C.A, Gupta R. Monoclonal antibodies for reducing malaria transmission. Lancet Infect Dis. 2022;22(11):1519-1520. DOI: 10.1016/S1473-3099(22)00413-3

Daubenberger C.A, Moncunill G. Next-generation malaria subunit vaccines to reduce disease burden in African children. Lancet Infect Dis. 2022;22(11):1655-1656. DOI: 10.1016/S1473-3099(22)00523-0

Hosch S, Mpina M, Nyakurungu E, Silochi Borico N, Obama T.M.A, Ovona M.C, Wagner P, Rubin S.E, Vickos U, Milang D.V.N, Ondo'o Ayekaba M, Phiri W.P, Daubenberger C.A, Schindler T. Genomic surveillance enables the identification of co-infections with multiple SARS-CoV-2 lineages in equatorial Guinea. Front Public Health. 2022;9:818401. DOI: 10.3389/fpubh.2021.818401

Hosch S, Yoboue C.A, Donfack O.T, Guirou E.A, Dangy J.P, Mpina M, Nyakurungu E, Blöchliger K, Guerra C.A, Phiri W.P, Ayekaba M.O, García G.A, Tanner M, Daubenberger C, Schindler T. Analysis of nucleic acids extracted from rapid diagnostic tests reveals a significant proportion of false positive test results associated with recent malaria treatment. Malar J. 2022;21:23. DOI: 10.1186/s12936-022-04043-7

Jongo S.A, Church L.W.P, Nchama Vunn, Hamad A, Chuquiyauri R, Kassim K.R, Athuman T, Deal A, Natasha K.C, Mtoro A, Mpina M, Nyakarungu E, Bidjimi G.O, Owono M.A, Maye E.R.M, Mangue M.E.O, Okomo G.N.N, Pasialo B.E.N, Mandumbi D.M.O, Mikue M.A.L, Mochomuemue F.L, Obono M.O, Besaha J.C.M, Bijeri J.R, Abegue G.M, Veri Y.R, Bela I.T, Chochi F.C, Lima Sánchez J.E, Pencelli V, Gayozo G, Nlang Jaem, Schindler T, James E.R, Abebe Y, Lemiale L, Stabler T.C, Murshedkar T, Chen M.C, Schwabe C, Ratsirarson J, Rivas M.R, Ayekaba M.O, Milang D.V.N, Falla C.C, Phiri W.P, Garcia G.A, Maas C.D, Nlavo B.M, Tanner M, Billingsley P.F, Kim Lee Sim B, Daubenberger C, Hoffman S.L, Abdulla S, Richie T.L. Multi-dose priming regimens of PfSPZ vaccine: safety and efficacy against controlled human malaria infection in Equatoguinean adults. Am J Trop Med Hyg. 2022;106(4):1215–1226. DOI: 10.4269/ajtmh.21-0942

Lebedin M, Foglierini M, Khorkova S, Vázquez García C, Ratswohl C, Davydov A.N, Turchaninova M.A, Daubenberger C, Chudakov D.M, Lanzavecchia A, de la Rosa K. Different classes of genomic inserts contribute to human antibody diversity. Proc Natl Acad Sci U S A. 2022;119(36):e2205470119. DOI: 10.1073/pnas.2205470119

Macià D, Campo J.J, Moncunill G, Jairoce C, Nhabomba A.J, Mpina M, Sorgho H, Dosoo D, Traore O, Kusi K.A, Williams N.A, Oberai A, Randall A, Sanz H, Valim C, Asante K.P, Owusu-Agyei S, Tinto H, Agnandji S.T, Kariuki S, Gyan B, Daubenberger C, Mordmüller B, Petrone P, Dobaño C. Strong off-target antibody reactivity to malarial antigens induced by RTS,S/AS01E vaccination is associated with protection. JCI Insight. 2022;7(10):e158030. DOI: 10.1172/jci.insight.158030

Manock S.R, Nsue V.U, Olotu A, Mpina M, Nyakarungu E, Raso J, Mtoro A, Ondo Mangue M.E, Ntutumu Pasialo B.E, Nguema R, Riyahi P, Schindler T, Daubenberger C, Church L.W.P, Billingsley P.F, Richie T.L, Abdulla S, Hoffman S.L. The impact of Loa loa microfilaraemia on research subject retention during a whole sporozoite malaria vaccine trial in Equatorial Guinea. Trans R Soc Trop Med Hyg. 2022;116(8):745-749. DOI: 10.1093/trstmh/trac019

Moncunill G, Carnes J, Chad Young W, Carpp L, De Rosa S, Campo J.J, Nhabomba A, Mpina M, Jairoce C, Finak G, Haas P, Muriel C, Van P, Sanz H, Dutta S, Mordmüller B, Agnandji S.T, Díez-Padrisa N, Williams N.A, Aponte J.J, Valim C, Neafsey D.E, Daubenberger C, McElrath M.J, Dobaño C, Stuart K, Gottardo R. Transcriptional correlates of malaria in RTS,S/AS01-vaccinated African children: a matched case-control study. eLife. 2022;11:e70393. DOI: 10.7554/eLife.70393

Mpina M, Stabler T.C, Schindler T, Raso J, Deal A, Acuche Pupu L, Nyakarungu E, Del Carmen Ovono Davis M, Urbano V, Mtoro A, Hamad A, Lopez M.S.A, Pasialo B, Eyang M.A.O, Rivas M.R, Falla C.C, Garcia G.A, Momo J.C, Chuquiyauri R, Saverino E, Preston Church L.W, Kim Lee Sim B, Manguire B, Tanner M, Maas C, Abdulla S, Billingsley P.F, Hoffman S.L, Jongo S, Richie T.L, Daubenberger C.A. Diagnostic performance and comparison of ultrasensitive and conventional rapid diagnostic test, thick blood smear and quantitative PCR for detection of low-density Plasmodium falciparum infections during a controlled human malaria infection study. Malar J. 2022;21:99. DOI: 10.1186/s12936-022-04103-y

Stabler T.C, Dwivedi A, Shrestha B, Joshi S, Schindler T, Ouattara A, García G.A, Daubenberger C, Silva J.C. Gene Coverage Count and Classification (GC3): a locus sequence coverage assessment tool using short-read whole genome sequencing data, and its application to identify and classify histidine-rich protein 2 and 3 deletions in Plasmodium falciparum. Malar J. 2022;21:357. DOI: 10.1186/s12936-022-04376-3

Yoboue C.A, Hosch S, Donfack O.T, Guirou E.A, Nlavo B.M, Ayekaba M.O, Guerra C, Phiri W.P, Garcia G.A, Schindler T, Daubenberger C.A. Characterising co-infections with Plasmodium spp., Mansonella perstans or Loa loa in asymptomatic children, adults and elderly people living on Bioko Island using nucleic acids extracted from malaria rapid diagnostic tests. PLoS Negl Trop Dis. 2022;16(1):e0009798. DOI: 10.1371/journal.pntd.0009798

Bechtold P, Wagner P, Hosch S, Siegrist D, Ruiz-Serrano A, Gregorini M, Mpina M, Ondó F.A, Obama J, Ayekaba M.O, Engler O, Stark W.J, Daubenberger C.A, Schindler T. Rapid identification of SARS-CoV-2 variants of concern using a portable peakPCR platform. Anal Chem. 2021;93(49):16350-16359. DOI: 10.1021/acs.analchem.1c02368

Brunetti G, Padovani F, De Pastina A, Rotella C, Monahan Am, Hoffman S.L, Jongo S.A, Abdulla S, Corradin G, Pluschke G, Daubenberger C, Hegner M. Nanotechnological immunoassay for rapid label-free analysis of candidate malaria vaccines. Nanoscale. 2021;13(4):2338-2349. DOI: 10.1039/D0NR08083G

Chen Y, Xu K, Piccoli L, Foglierini M, Tan J, Jin W, Gorman J, Tsybovsky Y, Zhang B, Traore B, Silacci-Fregni C, Daubenberger C, Crompton P.D, Geiger R, Sallusto F, Kwong P.D, Lanzavecchia A. Structural basis of malaria RIFIN binding by LILRB1-containing antibodies. Nature. 2021(592):639–643. DOI: 10.1038/s41586-021-03378-6

Cuénod A, Wüthrich D, Seth-Smith H.M.B, Ott C, Gehringer C, Foucault F, Mouchet R, Kassim A, Revathi G, Vogt D.R, von Felten S, Bassetti S, Tschudin-Sutter S, Hettich T, Schlotterbeck G, Homberger C, Casanova C, Moran-Gilad J, Sagi O, Rodriguez-Sanchez B, Muller F, Aerni M, Gaia V, van Dessel H, Kampinga G.A, Müller C, Daubenberger C, Pflüger V, Egli A. Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study. Genome Med. 2021;13:150. DOI: 10.1186/s13073-021-00960-5

Duffy F.J, Du Y, Carnes J, Epstein J.E, Hoffman S.L, Abdulla S, Jongo S, Mpina M, Daubenberger C, Aitchison J.D, Stuart K. Early whole blood transcriptional responses to radiation-attenuated Plasmodium falciparum sporozoite vaccination in malaria naive and malaria pre-exposed adult volunteers. Malar J. 2021;20:308. DOI: 10.1186/s12936-021-03839-3

Fink G, Orlova-Fink N, Schindler T, Grisi S, Ferrer A.P.S, Daubenberger C, Brentani A. Inactivated trivalent influenza vaccination is associated with lower mortality among patients with COVID-19 in Brazil. BMJ Evid Based Med. 2021;26(4):192-193. DOI: 10.1136/bmjebm-2020-111549

Jongo S.A, Urbano V, Church L.W.P, Olotu A, Manock S.R, Schindler T, Mtoro A, Kc N, Hamad A, Nyakarungu E, Mpina M, Deal A, Bijeri J.R, Ondo Mangue M.E, Ntutumu Pasialo B.E, Nguema G.N, Owono S.N, Rivas M.R, Chemba M, Kassim K.R, James E.R, Stabler T, Abebe Y, Saverino E, Sax J, Hosch S, Tumbo A.M, Gondwe L, Segura J.L, Falla C.C, Phiri W.P, Hergott D.E.B, Garcia G.A, Schwabe C, Maas C.D, Murshedkar T, Billingsley P.F, Tanner M, Ayekaba M.O, Sim B.K.L, Daubenberger C, Richie T.L, Abdulla S, Hoffman S.L. Immunogenicity and protective efficacy of radiation-attenuated and chemo-attenuated PfSPZ vaccines in Equatoguinean adults. Am J Trop Med Hyg. 2021;104(1):283-293. DOI: 10.4269/ajtmh.20-0435

Nchama Vunn, Said A.H, Mtoro A, Bidjimi G.O, Owono M.A, Maye E.R.M, Mangue M.E.O, Okomo G.N.N, Pasialo B.E.N, Ondo D.M, Lopez M.A, Mochomuemue F.L, Obono M.O, Besaha J.C.M, Chuquiyauri R, Jongo S.A, Kamaka K, Kibondo U.A, Athuman T, Falla C.C, Eyono J.N.M, Smith J.M, Garcia G.A, Raso J, Nyakarungu E, Mpina M, Schindler T, Daubenberger C, Lemiale L, Billingsley P.F, Sim B.K.L, Richie T.L, Church L.W.P, Olotu A, Tanner M, Hoffman S.L, Abdulla S. Incidence of Plasmodium falciparum malaria infection in 6-month to 45-year-olds on selected areas of Bioko Island, Equatorial Guinea. Malar J. 2021;20:322. DOI: 10.1186/s12936-021-03850-8

Oneko M, Steinhardt L.C, Yego R, Wiegand R.E, Swanson P.A, Kc N, Akach D, Sang T, Gutman J.R, Nzuu E.L, Dungani A, Kim Lee Sim B, Oloo P.N, Otieno K, Bii D.K, Billingsley P.F, James E.R, Kariuki S, Samuels A.M, Jongo S, Chebore W, Abdulla S, Daubenberger C, Mpina M, Styers D, Potter G.E, Abarbanell G, Richie T.L, Hoffman S.L, Seder R.A. Safety, immunogenicity and efficacy of PfSPZ vaccine against malaria in infants in western Kenya: a double-blind, randomized, placebo-controlled phase 2 trial. Nat Med. 2021;27(9):1636-1645. DOI: 10.1038/s41591-021-01470-y

Tumbo A.M, Schindler T, Dangy J.P, Orlova-Fink N, Bieri J.R, Mpina M, Milando F.A, Juma O, Hamad A, Nyakarungu E, Chemba M, Mtoro A, Ramadhan K, Olotu A, Makweba D, Mgaya S, Stuart K, Perreau M, Stapleton J.T, Jongo S, Hoffman S.L, Tanner M, Abdulla S, Daubenberger C. Role of human Pegivirus infections in whole Plasmodium falciparum sporozoite vaccination and controlled human malaria infection in African volunteers. Virol J. 2021;18(1):28. DOI: 10.1186/s12985-021-01500-8

Vanobberghen F, Lweno O, Kümmerle A, Mwebi K.D, Asilia P, Simon B, Mswata S, Schmidlin S, Glass T.R, Daubenberger C, Tanner M, Meyer-Monard S. Efficacy and safety of intravenous ferric carboxymaltose compared with oral iron for the treatment of iron deficiency anaemia in women after childbirth in Tanzania: a parallelgroup, open-label, randomised controlled phase 3 trial. Lancet Glob Health. 2021;9(2):e189-e198. DOI: 10.1016/S2214-109X(20)30448-4

Wilkinson E, Giovanetti M, Tegally H, San J.E, Lessells R, Cuadros D, Martin D.P, Rasmussen D.A, Zekri A.N, Sangare A.K, Ouedraogo A.S, Sesay A.K, Priscilla A, Kemi A.S, Olubusuyi A.M, Oluwapelumi A.O.O, Hammami A, Amuri A.A, Sayed A, Ouma A.E.O, Elargoubi A, Ajayi N.A, Victoria A.F, Kazeem A, George A, Trotter A.J, Yahaya A.A, Keita A.K, Diallo A, Kone A, Souissi A, Chtourou A, Gutierrez A.V, Page A.J, Vinze A, Iranzadeh A, Lambisia A, Ismail A, Rosemary A, Sylverken A, Femi A, Ibrahimi A, Marycelin B, Oderinde B.S, Bolajoko B, Dhaala B, Herring B.L, Njanpop-Lafourcade B.M, Kleinhans B, McInnis B, Tegomoh B, Brook C, Pratt C.B, Scheepers C, Akoua-Koffi C.G, Agoti C.N, Peyrefitte C, Daubenberger C, Morang'a C.M, Nokes D.J, Amoako D.G, Bugembe D.L, Park D, Baker D, Doolabh D, Ssemwanga D, Tshiabuila D, Bassirou D, Amuzu D.S.Y, Goedhals D, Omuoyo D.O, Maruapula D, Foster-Nyarko E, Lusamaki E.K, Simulundu E, Ong'era E.M, Ngabana E.N, Shumba E, El Fahime E, Lokilo E, Mukantwari E, Philomena E, Belarbi E, Simon-Loriere E, Anoh E.A, Leendertz F, Ajili F, Enoch F.O, Wasfi F, Abdelmoula F, Mosha F.S, Takawira F.T, Derrar F, Bouzid F, Onikepe F, Adeola F, Muyembe F.M, Tanser F, Dratibi F.A, Mbunsu G.K, Thilliez G, Kay G.L, Githinji G, van Zyl G, Awandare G.A, Schubert G, Maphalala G.P, Ranaivoson H.C, Lemriss H, Anise H, Abe H, Karray H.H, Nansumba H, Elgahzaly H.A, Gumbo H, Smeti I, Ayed I.B, Odia I, Ben Boubaker I.B, Gaaloul I, Gazy I, Mudau I, Ssewanyana I, Konstantinus I, Lekana-Douk J.B, Makangara J.C, Tamfum J.M, Heraud J.M, Shaffer J.G, Giandhari J, Li J, Yasuda J, Mends J.Q, Kiconco J, Morobe J.M, Gyapong J.O, Okolie J.C, Kayiwa J.T, Edwards J.A, Gyamfi J, Farah J, Nakaseegu J, Ngoi J.M, Namulondo J, Andeko J.C, Lutwama J.J, O'Grady J, Siddle K, Adeyemi K.T, Tumedi K.A, Said K.M, Hae-Young K, Duedu K.O, Belyamani L, Fki-Berrajah L, Singh L, Martins L.O, Tyers L, Ramuth M, Mastouri M, Aouni M, El Hefnawi M, Matsheka M.I, Kebabonye M, Diop M, Turki M, Paye M, Nyaga M.M, Mareka M, Damaris M.M, Mburu M.W, Mpina M, Nwando M, Owusu M, Wiley M.R, Youtchou M.T, Ayekaba M.O, Abouelhoda M, Seadawy M.G, Khalifa M.K, Sekhele M, Ouadghiri M, Diagne M.M, Mwenda M, Allam M, Phan M.V.T, Abid N, Touil N, Rujeni N, Kharrat N, Ismael N, Dia N, Mabunda N, Hsiao N.Y, Silochi N.B, Nsenga N, Gumede N, Mulder N, Ndodo N, Razanajatovo N.H, Iguosadolo N, Judith O, Kingsley O.C, Sylvanus O, Peter O, Femi O, Idowu O, Testimony O, Chukwuma O.E, Ogah O.E, Onwuamah C.K, Cyril O, Faye O, Tomori O, Ondoa P, Combe P, Semanda P, Oluniyi P.E, Arnaldo P, Quashie P.K, Dussart P, Bester P.A, Mbala P.K, Ayivor-Djanie R, Njouom R, Phillips R.O, Gorman R, Kingsley R.A, Carr R.A.A, El Kabbaj S, Gargouri S, Masmoudi S, Sankhe S, Lawal S.B, Kassim S, Trabelsi S, Metha S, Kammoun S, Lemriss S, Agwa S.H.A, Calvignac-Spencer S, Schaffner S.F, Doumbia S, Mandanda S.M, Aryeetey S, Ahmed S.S, Elhamoumi S, Andriamandimby S, Tope S, Lekana-Douki S, Prosolek S, Ouangraoua S, Mundeke S.A, Rudder S, Panji S, Pillay S, Engelbrecht S, Nabadda S, Behillil S, Budiaki S.L, van der Werf S, Mashe T, Aanniz T, Mohale T, Le-Viet T, Schindler T, Anyaneji U.J, Chinedu U, Ramphal U, Jessica U, George U, Fonseca V, Enouf V, Gorova V, Roshdy W.H, Ampofo W.K, Preiser W, Choga W.T, Bediako Y, Naidoo Y, Butera Y, de Laurent Z.R, Sall A.A, Rebai A, von Gottberg A, Kouriba B, Williamson C, Bridges D.J, Chikwe I, Bhiman J.N, Mine M, Cotten M, Moyo S, Gaseitsiwe S, Saasa N, Sabeti P.C, Kaleebu P, Tebeje Y.K, Tessema S.K, Happi C, Nkengasong J, de Oliveira T. A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa. Science. 2021;374(6566):423-431. DOI: 10.1126/science.abj4336

Billingsley P.F, Maas C.D, Olotu A, Schwabe C, Garcia G.A, Rivas M.R, Hergott D.E.B, Daubenberger C, Saverino E, Chaouch A, Embon O, Chemba M, Nyakrungu E, Hamad A, Cortes C, Schindler T, Mpina M, Mtoro A, Sim K.L.B, Richie T.L, McGhee K, Tanner M, Obiang Lima G.M, Abdulla S, Hoffman S.L, Ayekaba M.O. The Equatoguinean Malaria Vaccine Initiative: from the launching of a clinical research platform to malaria elimination planning in Central West Africa. Am J Trop Med Hyg. 2020;103(3):947-954. DOI: 10.4269/ajtmh.19-0966

Camponovo F, Campo J.J, Le T.Q, Oberai A, Hung C, Pablo J.V, Teng A.A, Liang X, Sim B.K.L, Jongo S, Abdulla S, Tanner M, Hoffman S.L, Daubenberger C, Penny M. Proteome-wide analysis of a malaria vaccine study reveals personalized humoral immune profiles in Tanzanian adults. eLife. 2020;9:e53080. DOI: 10.7554/eLife.53080

Daubenberger C.A. Towards protective immune responses against malaria in pregnant women. Lancet Infect Dis. 2020;20(5):517-519. DOI: 10.1016/S1473-3099(20)30002-5

Geiger K.M, Guignard D, Yang C, Bikorimana J.-P, Correia B.E, Houard S, Mkindi C, Daubenberger C, Spertini F, Corradin G, Audran R. Epitope mapping and fine specificity of human T and B cell responses for novel candidate blood-stage malaria vaccine P27A. Front Immunol. 2020;11:412. DOI: 10.3389/fimmu.2020.00412

Guirou E.A, Schindler T, Hosch S, Donfack O.T, Yoboue C.A, Krähenbühl S, Deal A, Cosi G, Gondwe L, Mwangoka G, Masuki H, Salim N, Mpina M, Said J, Abdualla S, Hoffmann S.L, Nlavo B.N, Maas C, Cortes Falla C, Phiri W.O, Garcia G.A, Tanner M, Daubenberger C. Molecular malaria surveillance using a novel protocol for extraction and analysis of nucleic acids retained on used rapid diagnostic tests. Sci Rep. 2020;10:12305. DOI: 10.1038/s41598-020-69268-5

Hill D.L, Carr E.J, Rutishauser T, Moncunill G, Campo J.J, Innocentin S, Mpina M, Nhabomba A, Tumbo A, Jairoce C, Moll H.A, van Zelm M.C, Dobaño C, Daubenberger C, Linterman M.A. Immune system development varies according to age, location, and anemia in African children. Sci Transl Med. 2020;12(529):eaaw9522. DOI: 10.1126/scitranslmed.aaw9522

Jongo S.A, Church L.W.P, Mtoro A.T, Chakravarty S, Ruben A.J, Swanson Ii P.A, Kassim K.R, Mpina M, Tumbo A.M, Milando F.A, Qassim M, Juma O.A, Bakari B.M, Simon B, James E.R, Abebe Y, Kc N, Saverino E, Fink M, Cosi G, Gondwe L, Studer F, Styers D, Seder R.A, Schindler T, Billingsley P.F, Daubenberger C, Sim B.K.L, Tanner M, Richie T.L, Abdulla S, Hoffman S.L. Increase of dose associated with decrease in protection against controlled human malaria infection by PfSPZ vaccine in Tanzanian adults. Clin Infect Dis. 2020;71(11):2849-2857. DOI: 10.1093/cid/ciz1152

Keller D, Rothen J, Dangy J.P, Saner C, Daubenberger C, Allan F, Ame S.M, Ali S.M, Kabole F, Hattendorf J, Rollinson D, Seyfarth R, Knopp S. Performance of a real-time PCR approach for diagnosing Schistosoma haematobium infections of different intensity in urine samples from Zanzibar. Infect Dis Poverty. 2020;9:128. DOI: 10.1186/s40249-020-00726-y

Krähenbühl S, Studer F, Guirou E, Deal A, Mächler P, Hosch S, Mpina M, Mswata S, Daubenberger C, Schindler T. ELIMU-MDx: a web-based, open-source platform for storage, management and analysis of diagnostic qPCR data. Biotechniques. 2020;68(1):22-27. DOI: 10.2144/btn-2019-0064

Moncunill G, Scholzen A, Mpina M, Nhabomba A, Hounkpatin A.B, Osaba L, Valls R, Campo J.J, Sanz H, Jairoce C, Williams N.A, Pasini E.A, Arteta D, Kocken C.H.M, Agnandji S.T, Mas J.M, Mordmüller B, Daubenberger C, Sauerwein R, Dobaño C. Antigen-stimulated PBMC transcriptional protective signatures for malaria immunization. Sci Transl Med. 2020;12(543):eaay8924. DOI: 10.1126/scitranslmed.aay8924

Palmateer N.C, Tretina K, Orvis J, Ifeonu O.O, Crabtree J, Drabek E, Pelle R, Awino E, Gotia H.T, Munro J.B, Tallon L, Morrison W.I, Daubenberger C.A, Nene V, Knowles D.P, Bishop R.P, Silva J.C. Capture-based enrichment of Theileria parva DNA enables full genome assembly of first buffalo-derived strain and reveals exceptional intra-specific genetic diversity. PLoS Negl Trop Dis. 2020;14(10):e0008781. DOI: 10.1371/journal.pntd.0008781

Rothen J, Sapugahawatte D.N, Li C, Lo N, Vogel G, Foucault F, Pfluger V, Pothier J.F, Blom J, Daubenberger C, Ip M. A simple, rapid typing method for Streptococcus agalactiae based on ribosomal subunit proteins by MALDI-TOF MS. Sci Rep. 2020;10:8788. DOI: 10.1038/s41598-020-65707-5

Rutishauser T, Lepore M, Di Blasi D, Dangy J.P, Abdulla S, Jongo S, Ramadhani K, Sim B.K.L, Hoffman S.L, Tanner M, Daubenberger C, De Libero G. Activation of TCR Vδ1+ and Vδ1-Vδ2- γδ T cells upon controlled infection with Plasmodium falciparum in Tanzanian volunteers. J Immunol. 2020;204(1):180-191. DOI: 10.4049/jimmunol.1900669

Schmaler M, Orlova-Fink N, Rutishauser T, Adbdulla S, Daubenberger C. Human unconventional T cells in Plasmodium falciparum infection. Semin Immunopathol. 2020;42(3):265-277. DOI: 10.1007/s00281-020-00791-3

Tretina K, Haidar M, Madsen-Bouterse S.A, Sakura T, Mfarrej S, Fry L, Chaussepied M, Pain A, Knowles D.P, Nene V.M, Ginsberger D, Daubenberger C, Bishop R.P, Langsley G, Silva J.C. Theileria parasites subvert E2F signaling to stimulate leukocyte proliferation. Sci Rep. 2020;10:3982. DOI: 10.1038/s41598-020-60939-x

Tretina K, Pelle R, Orvis J, Gotia H.T, Ifeonu O.O, Kumari P, Palmateer N.C, Iqbal S.B.A, Fry L.M, Nene V.M, Daubenberger C.A, Bishop R.P, Silva J.C. Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms. BMC Genomics. 2020;21:279. DOI: 10.1186/s12864-020-6683-0

Amelio P, Portevin D, Hella J, Reither K, Kamwela L, Lweno O, Tumbo A, Geoffrey L, Ohmiti K, Ding S, Pantaleo G, Daubenberger C, Perreau M. HIV infection functionally impairs Mycobacterium tuberculosis-specific CD4 and CD8 T-cell responses. J Virol. 2019;93(5):e01728-18. DOI: 10.1128/JVI.01728-18

Dobaño C, Sanz H, Sorgho H, Dosoo D, Mpina M, Ubillos I, Aguilar R, Ford T, Díez-Padrisa N, Williams N.A, Ayestaran A, Traore O, Nhabomba A.J, Jairoce C, Waitumbi J, Agnandji S.T, Kariuki S, Abdulla S, Aponte J.J, Mordmüller B, Asante K.P, Owusu-Agyei S, Tinto H, Campo J.J, Moncunill G, Gyan B, Valim C, Daubenberger C. Concentration and avidity of antibodies to different circumsporozoite epitopes correlate with RTS,S/AS01E malaria vaccine efficacy. Nat Commun. 2019;10:2174. DOI: 10.1038/s41467-019-10195-z

Hill D.L, Pierson W, Bolland D.J, Mkindi C, Carr E.J, Wang J, Houard S, Wingett S.W, Audran R, Wallin E.F, Jongo S.A, Kamaka K, Zand M, Spertini F, Daubenberger C, Corcoran A.E, Linterman M.A. The adjuvant GLA-SE promotes human Tfh cell expansion and emergence of public TCRβ clonotypes. J Exp Med. 2019;216(8):1857-1873. DOI: 10.1084/jem.20190301

Jongo S.A, Church L.W.P, Mtoro A.T, Chakravarty S, Ruben A.J, Swanson P.A, Kassim K.R, Mpina M, Tumbo A.M, Milando F.A, Qassim M, Juma O.A, Bakari B.M, Simon B, James E.R, Abebe Y, K C.N, Saverino E, Gondwe L, Studer F, Fink M, Cosi G, El-Khorazaty J, Styers D, Seder R.A, Schindler T, Billingsley P.F, Daubenberger C, Sim B.K.L, Tanner M, Richie T.L, Abdulla S, Hoffman S.L. Safety and differential antibody and T-cell responses to Plasmodium falciparum sporozoite vaccine by age in Tanzanian adults, adolescents, children, and infants. Am J Trop Med Hyg. 2019;100(6):1433-1444. DOI: 10.4269/ajtmh.18-0835

Mkindi C.G, Marandu E.A, Masawa N, Bani F, Nyuri A, Byakuzana T, Klimkait T, Ding S, Pantaleo G, Battegay M, Orlova-Fink N, Weisser-Rohacek M, Daubenberger C. Safety and tolerance of lymph node biopsies from chronic HIV-1 volunteers in rural Tanzania. BMC Res Notes. 2019;12:561. DOI: 10.1186/s13104-019-4600-x

Rothen J, Pothier J.F, Foucault F, Blom J, Nanayakkara D, Li C, Ip M, Tanner M, Vogel G, Pflüger V, Daubenberger C. Subspecies typing of Streptococcus agalactiae based on ribosomal subunit protein mass variation by MADLI-TOF MS. Front Microbiol. 2019;10:471. DOI: 10.3389/fmicb.2019.00471

Schindler T, Deal A.C, Fink M, Guirou E, Moser K.A, Mwakasungula S.M, Mihayo M.G, Jongo S.A, Chaki P.P, Abdulla S, Valverde P.C.M, Torres K, Bijeri J.R, Silva J.C, Hoffman S.L, Gamboa D, Tanner M, Daubenberger C. A multiplex qPCR approach for detection of pfhrp2 and pfhrp3 gene deletions in multiple strain infections of Plasmodium falciparum. Sci Rep. 2019;9:13107. DOI: 10.1038/s41598-019-49389-2

Schindler T, Jongo S, Studer F, Mpina M, Mwangoka G, Mswata S, Ramadhani K, Sax J, Church L.W.P, Richie T.L, Tanner M, Hoffman S.L, Abdulla S, Daubenberger C. Two cases of long‑lasting, sub‑microscopic Plasmodium malariae infections in adults from coastal Tanzania. Malar J. 2019;18:149. DOI: 10.1186/s12936-019-2787-x

Schindler T, Robaina T, Sax J, Bieri J.R, Mpina M, Gondwe L, Acuche L, Garcia G, Cortes C, Maas C, Daubenberger C. Molecular monitoring of the diversity of human pathogenic malaria species in blood donations on Bioko Island, Equatorial Guinea. Malar J. 2019;18:9. DOI: 10.1186/s12936-019-2639-8

Steiner-Monard V, Kamaka K, Karoui O, Roethlisberger S, Audran R, Daubenberger C, Fayet-Mello A, Erdmann-Voisin A, Felger I, Geiger K, Govender L, Houard S, Huber E, Mayor C, Mkindi C, Portevin D, Rusch S, Schmidlin S, Tiendrebeogo R.W, Theisen M, Thierry A.C, Vallotton L, Corradin G, Leroy O, Abdulla S, Shekalaghe S, Genton B, Spertini F, Jongo S.A. The candidate blood-stage malaria vaccine P27A induces a robust humoral response in a fast track to the field phase I trial in exposed and non exposed volunteers. Clin Infect Dis. 2019;68(3):466-474. DOI: 10.1093/cid/ciy514

Boillat-Blanco N, Tumbo A.N, Perreau M, Amelio P, Ramaiya K.L, Mganga M, Schindler C, Gagneux S, Reither K, Probst-Hensch N, Pantaleo G, Daubenberger C, Portevin D. Hyperglycaemia is inversely correlated with live M. bovis BCG-specific CD4+ T cell responses in Tanzanian adults with latent or active tuberculosis. Immun Inflamm Dis. 2018;6(2):345-353. DOI: 10.1002/iid3.222

Jongo S.A, Shekalage S.A, Church L.W.P, Ruben A.J, Schindler T, Zenklusen I, Rutishauser T, Rothen J, Tumbo A, Mkindi C, Mpina M, Mtoro A.T, Ishizuka A.S, Ramadhani K.K, Milando F.A, Qassim M, Juma O.A, Mwakasungula S, Simon B, James E.R, Abebe Y, KC N, Chakravarty S, Saverino E, Bakari B.M, Billingsley P.F, Seder R.A, Daubenberger C, Sim B.K.L, Richie T.L, Tanner M, Abdulla S, Hoffman S.L. Safety, immunogenicity, and protective efficacy against controlled human malaria infection of Plasmodium falciparum sporozoites vaccine in Tanzanian adults. Am J Trop Med Hyg. 2018;99(2):338-349. DOI: 10.4269/ajtmh.17-1014

Morach M, Stephan R, Schmitt S, Ewers C, Zschock M, Reyes-Velez J, Gilli U, Del Pilar Crespo-Ortiz M, Crumlish M, Gunturu R, Daubenberger C.A, Ip M, Regli W, Johler S. Population structure and virulence gene profiles of Streptococcus agalactiae collected from different hosts worldwide. Eur J Clin Microbiol Infect Dis. 2018;37(3):527-536. DOI: 10.1007/s10096-017-3146-x

Olotu A, Urbano V, Hamad A, Eka M, Chemba M, Nyakarungu E, Raso J, Eburi E, Mandumbi D.O, Hergott D, Maas C.D, Ayekaba M.O, Milang D.N, Rivas M.R, Schindler T, Embon O.M, Ruben A.J, Saverino E, Abebe Y, Natasha K.C, James E.R, Murshedkar T, Manoj A, Chakravarty S, Li M, Adams M, Schwabe C, Segura L, Daubenberger C, Tanner M, Richie T.L, Bellingsley P.F, Kim Lee Sim B, Abdulla S, Hoffman S.L. Advancing global health through development and clinical trials partnerships: a randomized, placebo-controlled, double-blind assessment of safety, tolerability, and immunogenicity of PfSPZ vaccine for malaria in healthy Equatoguinean men. Am J Trop Med Hyg. 2018;98(1):308-318. DOI: 10.4269/ajtmh.17-0449

Rothen J, Murie C, Carnes J, Anupama A, Abdulla S, Chemba M, Mpina M, Tanner M, Lee Sim B.K, Hoffman S.L, Gottardo R, Daubenberger C, Stuart K. Whole blood transcriptome changes following controlled human malaria infection in malaria pre-exposed volunteers correlate with parasite prepatent period. PLoS One. 2018;13(6):e0199392. DOI: 10.1371/journal.pone.0199392

Schneeberger P.H.H, Coulibaly J.T, Panic G, Daubenberger C, Gueuning M, Frey J.E, Keiser J. Investigations on the interplays between Schistosoma mansoni, praziquantel and the gut microbiome. Parasit Vectors. 2018;11:168. DOI: 10.1186/s13071-018-2739-2

Tan J, Sack B.K, Oyen D, Zenklusen I, Piccoli L, Barbieri S, Foglierini M, Fregni C.S, Marcandalli J, Jongo S, Abdulla S, Perez L, Corradin G, Varani L, Sallusto F, Sim B.K.L, Hoffman S.L, Kappe S.H.I, Daubenberger C, Wilson I.A, Lanzavecchia A. A public antibody lineage that potently inhibits malaria infection through dual binding to the circumsporozoite protein. Nat Med. 2018;24(4):401-407. DOI: 10.1038/nm.4513

Ubillos I, Ayestaran A, Nhabomba A.J, Dosoo D, Vidal M, Jimenez A, Jairoce C, Sanz H, Aguilar R, Williams N.A, Diez-Padrisa N, Mpina M, Sorgho H, Agnandji S.T, Kariuki S, Mordmuller B, Daubenberger C, Asante K.P, Owusu-Agyei S, Sacarlal J, Aide P, Aponte J.J, Dutta S, Gyan B, Campo J.J, Valim C, Moncunill G, Dobano C. Baseline exposure, antibody subclass, and hepatitis B response differentially affect malaria protective immunity following RTS,S/AS01E vaccination in African children. BMC Med. 2018;16:197. DOI: 10.1186/s12916-018-1186-4

Vogel G, Cuénod A, Mouchet R, Strauss A, Daubenberger C, Pflueger V, Portevin D. Functional characterization and phenotypic monitoring of human hematopoietic stem cell expansion and differentiation of monocytes and macrophages by whole-cell mass spectrometry. Stem Cell Res. 2018;26:47-54. DOI: 10.1016/j.scr.2017.11.013

Zenklusen I, Jongo S, Abdulla S, Ramadhani K, Sim B.K.L, Cardamone H, Flannery E.L, Nguyen T, Fishbaugher M, Steel R.W.J, Betz W, Carmago N, Mikolajczak S, Kappe S.H.I, Hoffman S.L, Sack B.K, Daubenberger C. Immunization of malaria pre-exposed volunteers with PfSPZ Vaccine elicits long-lived IgM invasion-inhibitory and complement-fixing antibodies. J Infect Dis. 2018;217(10):1569-1578. DOI: 10.1093/infdis/jiy080

Amelio P, Portevin D, Reither K, Mhimbira F, Mpina M, Tumbo A, Nickel B, Marti H, Knopp S, Ding S, Penn-Nicholson A, Darboe F, Ohmiti K, Scriba T.J, Pantaleo G, Daubenberger C, Perreau M. Mixed Th1 and Th2 Mycobacterium tuberculosis-specific CD4 T cell responses in patients with active pulmonary tuberculosis from Tanzania. PLoS Negl Trop Dis. 2017;11(7):e0005817. DOI: 10.1371/journal.pntd.0005817

Kassim A, Pflüger V, Premji Z, Daubenberger C, Revathi G. Comparison of biomarker based Matrix Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry (MALDI-TOF MS) and conventional methods in the identification of clinically relevant bacteria and yeast. BMC Microbiol. 2017;17:128. DOI: 10.1186/s12866-017-1037-z

Moncunill G, de Rosa S.C, Ayesaran A, Nhabomba A.J, Mpina M, Cohen K.W, Jairoce C, Rutishauser T, Campo J.J, Harezlak J, Sanz H, Diez-Padrisa N, Williams N.A, Morris D, Aponte J.J, Valim C, Daubenberger C, Dobano C, McElrath M.J. RTS,S/AS01E malaria vaccine induces memory and polyfunctional T cell responses in a pediatric African phase III trial. Front Immunol. 2017;8:1008. DOI: 10.3389/fimmu.2017.01008

Moncunill G, Mpina M, Nhabomba A.J, Aguilar R, Ayestaran A, Sanz H, Campo J.J, Jairoce C, Barrios D, Dong Y, Diez-Padrisa N, Fernandes J.F, Abdulla S, Sacarlal J, Williams N.A, Harezlak J, Mordmuller B, Agnandji S.T, Aponte J.J, Daubenberger C, Valim C, Dobano C. Distinct helper T cell type 1 and 2 responses associated with malaria protection and risk in RTS,S/AS01E vaccinees. Clin Infect Dis. 2017;65(5):746-755. DOI: 10.1093/cid/cix429

Mpina M, Maurice N.J, Yajima M, Slichter C.K, Miller H.W, Dutta M, McElrath M.J, Stuart K.D, De Rosa S.C, McNevin J.P, Linsley P.S, Abdulla S, Tanner M, Hoffman S.L, Gottardo R, Daubenberger C.A, Prlic M. Controlled human malaria infection leads to long-lasting changes in innate and innate-like lymphocyte populations. J Immunol. 2017;199:107-118. DOI: 10.4049/jimmunol.1601989

Pieper K, Tan J, Piccoli L, Foglierini M, Barbieri S, Chen Y, Silacci-FregniC, Wolf T, Jarrossay D, Anderle M, Abdi A, Ndungu F.M, Doumbo O.K, Traore B, Tran T.M, Jongo S, Zenklusen I, Crompton P.D, Daubenberger C, Bull P.C, Sallusto F, Lanzavecchia A. Public antibodies to malaria antigens generated by two LAIR1 insertion modalities. Nature. 2017;548(7669):597-601. DOI: 10.1038/nature23670

Rothen J, Schindler T, Pothier J.F, Younan M, Certa U, Daubenberger C, Pflüger V, Jores J. Draft genome sequences of seven Streptococcus agalactiae strains isolated from Camelus dromedarius at the Horn of Africa. Genome Announc. 2017;5(28):e00525-17. DOI: 10.1128/genomeA.00525-17

Sanz H, Aponte J.J, Harezlak J, Dong Y, Ayestaran A, Nhabomba A, Mpina M, Maurin O.R, Diez-Padrisa N, Aguilar R, Moncunill G, Selidji Todagbe A, Daubenberger C, Dobaño C, Valim C. drLumi: an open-source package to manage data, calibrate, and conduct quality control of multiplex bead-based immunoassays data analysis. PLoS One. 2017;12(11):e0187901. DOI: 10.1371/journal.pone.0187901

Boillat-Blanco N, Bovet P, Ramaiya K.L, Mganga M, Minja L.T, Saleh L, Imboden M, Schindler C, Gagneux S, Daubenberger C, Reither K, Probst-Hensch N. Association between tuberculosis, diabetes and 25 hydroxyvitamin D in Tanzania: a longitudinal case control study. BMC Infect Dis. 2016;16:626. DOI: 10.1186/s12879-016-1960-x

Boillat-Blanco N, Ramaiya K.L, Mganga M, Minja L.T, Bovet P, Schindler C, Von Eckardstein A, Gagneux S, Daubenberger C, Reither K, Probst-Hensch N. Transient hyperglycemia in patients with tuberculosis in Tanzania: implications for diabetes screening algorithms. J Infect Dis. 2016;213(7):1163-1172. DOI: 10.1093/infdis/jiv568

Gotia H.T, Munro J.B, Knowles D.P, Daubenberger C.A, Bishop R.P, Silva J.C. Absolute quantification of the host-to-parasite DNA ratio in Theileria parva-infected lymphocyte cell lines. PLoS One. 2016;11(3):e0150401. DOI: 10.1371/journal.pone.0150401

Olds C.L, Mwaura S, Odongo D.O, Scoles G.A, Bishop R, Daubenberger C. Induction of humoral immune response to multiple recombinant Rhipicephalus appendiculatus antigens and their effect on tick feeding success and pathogen transmission. Parasit Vectors. 2016;9:484. DOI: 10.1186/s13071-016-1774-0

Rothen J, Githaka N, Kanduma E.G, Olds C, Pflüger V, Mwaura S, Bishop R.P, Daubenberger C. Matrix-assisted laser desorption/ionization time of flight mass spectrometry for comprehensive indexing of East African ixodid tick species. Parasit Vectors. 2016;9:151. DOI: 10.1186/s13071-016-1424-6

Boillat-Blanco N, Mganga M, Ramaiya K.L, Mrangu N.S, Minja L.T, Schindler C, Von Eckardstein A, Gagneux S, Daubenberger C, Reither K, Probst-Hensch N. Longitudinal evolution of diabetes during tuberculosis in Dar es Salaam, Tanzania. Trop Med Int Health, 2015;20(Suppl. 1):57-58. Abstracts of the 9th European Congress on Tropical Medicine and International Health, 6-10 September 2015, Basel, Switzerland

Heckel T, Schmucki R, Berrera M, Ringshandl S, Badi L, Steiner G, Ravon M, Küng E, Kuhn B, Kratochwil N.A, Schmitt G, Kiialainen A, Nowaczyk C, Daff H, Khan A.P, Lekolool I, Pelle R, Okoth E, Bishop R, Daubenberger C, Ebeling M, Certa U. Functional analysis and transcriptional output of the Göttingen minipig genome. BMC Genomics. 2015;16:932. DOI: 10.1186/s12864-015-2119-7

Jongo S, Steiner-Monard V, Audran R, Karoui O, Geiger K, Corradin G, Tiendrebeogo R.W, Kana I.H, Theisen M, Rutaihwa M, Kamaka K, Daubenberger C, Abdula S, Tanner M, Genton B, Shekalaghe S, Spertini F, Leroy O, Houard S. Safety and immunogenicity of novel candidate blood-stage malaria vaccine P27A with alhydrogel (R) or GLA-SE as adjuvant in healthy malaria non-exposed European and malaria exposed African adults aged 18-45 years. Trop Med Int Health, 2015;20(Suppl. 1):21

Lenz N, Schindler T, Kagina B.M, Zhang J.D, Lukindo T, Mpina M, Bang P, Kromann I, Hoff S.T, Andersen P, Reither K, Churchyard G.J, Certa U, Daubenberger C.A. Antiviral innate immune activation in HIV infected adults negatively affects H1/IC31(R) induced vaccine-specific memory CD4+ T cells. Clin Vaccine Immunol. 2015;22(7):688-696. DOI: 10.1128/CVI.00092-15

Mashoud N.S, Knopp S, Lweno O, Abdul U, Mohammed A, Schindler T, Rothen J, Masimba J, Denis K, Mohammed A.S, Althaus F, Abdulla S, Tanner M, Daubenberger C, Genton B. Geohelminth co-infections associated with outcome of benzimidazole treatment for individual species. Trop Med Int Health, 2015;20(Suppl. 1):321-322

Masoud N.S, Lenz N, Schindler T, Knopp S, Lweno O, Abdul U, Mohamed A, Rothen J, Masimba J, Kwaba D, Mohammed A.S, Althaus F, Abdulla S, Tanner M, Daubenberger C, Genton B. The impact of soil transmitted helminth on malaria clinical presentation and treatment outcome: a case control study among children in Bagamoyo district, coastal region of Tanzania. Trop Med Int Health, 2015;20(Suppl. 1):41-42. Abstracts of the 9th European Congress on Tropical Medicine and International Health, 6-10 September 2015, Basel, Switzerland

Norling M, Bishop R.P, Pelle R, Qi W, Henson S, Drábek E.F, Tretina K, Odongo D, Mwaura S, Njoroge T, Bongcam-Rudloff E, Daubenberger C.A, Silva J.C. The genomes of three stocks comprising the most widely utilized live sporozoite Theileria parva vaccine exhibit very different degrees and patterns of sequence divergence. BMC Genomics. 2015;16:729. DOI: 10.1186/s12864-015-1910-9

Obiero J.M, Shekalaghe S, Hermsen C.C, Mpina M, Bijker E.M, Roestenberg M, Teelen K, Billingsley P.F, Sim B.K, James E.R, Daubenberger C.A, Hoffman S.L, Abdulla S, Sauerwein R.W, Scholzen A. Impact of malaria pre-exposure on anti-parasite cellular and humoral immune responses after controlled human malaria infection. Infect Immun. 2015;83(5):2185-2196. DOI: 10.1128/IAI.03069-14

Portevin D, Moukambi F, Mpina M, Bauer A, Haraka F, Chachage M, Metzger P, Saathoff E, Clowes P, Ntinginya N.E, Rachow A, Hoelscher M, Reither K, Daubenberger C.A, Geldmacher C. Maturation and mip-1beta production of cytomegalovirus-specific T cell responses in Tanzanian children, adolescents and adults: impact by HIV and Mycobacterium tuberculosis co-infections. PLoS One. 2015;10(5):e0126716. DOI: 10.1371/journal.pone.0126716

Portevin D, Pflüger V, Otieno P, Brunisholz R, Vogel G, Daubenberger C. Quantitative whole-cell MALDI-TOF MS fingerprints distinguishes human monocyte sub-populations activated by distinct microbial ligands. BMC Biotechnol. 2015;15:24. DOI: 10.1186/s12896-015-0140-1

Salim N, Knopp S, Lweno O, Abdul U, Mohamed A, Schindler T, Rothen J, Masimba J, Kwaba D, Mohammed A.S, Althaus F, Abdulla S, Tanner M, Daubenberger C, Genton B. Distribution and risk factors for Plasmodium and helminth co-infections: a cross-sectional survey among children in Bagamoyo district, coastal region of Tanzania. PLoS Negl Trop Dis. 2015;9(4):e0003660. DOI: 10.1371/journal.pntd.0003660

Knopp S, Salim N, Schindler T, Karagiannis-Voules D.A, Rothen J, Lweno O, Mohammed A.S, Singo R, Benninghoff M, Nsojo A.A, Genton B, Daubenberger C. Diagnostic accuracy of Kato-Katz, FLOTAC, Baermann and PCR methods for the detection of light-intensity hookworm and Strongyloides stercoralis infections in Tanzania. Am J Trop Med Hyg. 2014;90(3):535-545. DOI: 10.4269/ajtmh.13-0268

Mwakasungula S, Schindler T, Jongo S, Moreno E, Kamaka K, Mohammed M, Joseph S, Rashid R, Athuman T, Tumbo A.M, Hamad A, Lweno O, Tanner M, Shekalaghe S, Daubenberger C.A. Red blood cell indices and prevalence of hemoglobinopathies and glucose 6 phosphate dehydrogenase deficiencies in male Tanzanian residents of Dar es Salaam. Int J Mol Epidemiol Genet. 2014;5(4):185-194

Portevin D, Moukambi F, Clowes P, Bauer A, Chachage M, Ntinginya E.N, Mfinanga E, Said K, Haraka F, Rachow A, Saathoff E, Mpina M, Jugheli L, Lwilla F, Marais B.J, Hoelscher M, Daubenberger C, Reither K, Geldmacher C. Assessment of the novel T-cell activation marker-tuberculosis assay for diagnosis of active tuberculosis in children: a prospective proof-of-concept study. Lancet Infect Dis. 2014;14(10):931-938. DOI: 10.1016/S1473-3099(14)70884-9

Reither K, Katsoulis L, Beattie T, Gardiner N, Lenz N, Said K, Mfinanga E, Pohl C, Fielding K.L, Jeffery H, Kagina B.M, Hughes E.J, Scriba T.J, Hanekom W.A, Hoff S.T, Bang P, Kromann I, Daubenberger C, Andersen P, Churchyard G.J. Safety and immunogenicity of H1/IC31(R), an adjuvanted TB subunit vaccine, in HIV-infected adults with CD4+ lymphocyte counts greater than 350 cells/mm3: a phase II, multi-centre, double-blind, randomized, placebo-controlled trial. PLoS One. 2014;9(12):e114602. DOI: 10.1371/journal.pone.0114602

Salim N, Schindler T, Abdul U, Rothen J, Genton B, Lweno O, Mohammed A.S, Masimba J, Kwaba D, Abdulla S, Tanner M, Daubenberger C, Knopp S. Enterobiasis and strongyloidiasis and associated co-infections and morbidity markers in infants, preschool- and school-aged children from rural coastal Tanzania: a cross-sectional study. BMC Infect Dis. 2014;14:644. DOI: 10.1186/s12879-014-0644-7

Shekalaghe S, Rutaihwa M, Billingsley P.F, Chemba M, Daubenberger C.A, James E, Mpina M, Ali Juma O, Schindler T, Huber E, Gunasekera A, Manoj A, Simon B, Savarino E, Church L.W, Hermsen C.C, Sauerwein R.W, Plowe C.V, Venkatesan M, Sasi P, Lweno O, Mutani P, Hamad A, Mohammed A, Urassa A, Mzee T, Padilla D, Ruben A, Lee Sim B.K, Tanner M, Abdullah S, Hoffman S.L. Controlled human malaria infection of Tanzanians by intradermal injection of aseptic, purified, cryopreserved Plasmodium falciparum sporozoites. Am J Trop Med Hyg. 2014;91(3):471-480. DOI: 10.4269/ajtmh.14-0119

Shekelaghe S, Jongo S, Moreno E, Lweno O, Hemed A, Kassner K, Juma O, Gwandu C, Kato W, Mavere C, Rashid R, Mollel J, Mpina M, Daubenberger C.A, Billingsley P.F, Lee Sim B.K, Richie T.L, Tanner M, Abdullah S, Hoffman S.L. Assessing efficacy of the PfSPZ vaccine by controlled human Malaria infection in Tanzania. Am J Trop Med Hyg, 2014;91(5 Suppl. 1):203

Tretina K, Gotia H.T, Orvis J, Abolude O.O, Kumari P, Nene V.M, Daubenberger C, Bishop R.P, Silva J.C. Rna-seq-based structural annotation and regulatory motif discovery in theileria parva, an apicomplexan parasite of cattle in sub-Saharan Africa. Am J Trop Med Hyg, 2014;91(5 Suppl. 1):357

Fischer A, Liljander A, Kaspar H, Muriuki C, Fuxelius H.H, Bongcam-Rudloff E, de Villiers E.P, Huber C.A, Frey J, Daubenberger C, Bishop R, Younan M, Jores J. Camel Streptococcus agalactiae populations are associated with specific disease complexes and acquired the tetracycline resistance gene tetM via Tn916-like element. Vet Res. 2013;44:86. DOI: 10.1186/1297-9716-44-86

Olds C, Bishop R, Daubenberger C. Anti-tick vaccines for the control of ticks affecting livestock. In: Giese M, ed. Molecular vaccines: from prophylaxis to therapy, vol. 1, 295-311. Wien: Springer, 2013

Walther M, Jensen J, Daubenberger C.A, Hegner M. Cantilever sensor array-based diagnostic device to monitor the humoral immune response against malaria vaccine candidates. Stanford, CA: Stanford University, 2013. Proceedings of the 10th International Nanomechanical Sensing workshop

Daubenberger C.A. First clinical trial of purified, irradiated malaria sporozoites in humans. Expert Rev Vaccines. 2012;11(1):31-33. DOI: 10.1586/erv.11.161

Henson S, Bishop R.P, Morzaria S, Spooner P.R, Pelle R, Poveda L, Ebeling M, Kung E, Certa U, Daubenberger C.A, Qi W. High-resolution genotyping and mapping of recombination and gene conversion in the protozoan Theileria parva using whole genome sequencing. BMC Genomics. 2012;13:503. DOI: 10.1186/1471-2164-13-503

Olds C, Mwaura S, Crowder D, Odongo D, van Oers M, Owen J, Bishop R, Daubenberger C. Immunization of cattle with Ra86 impedes Rhipicephalus appendiculatus nymphal-to-adult molting. Ticks Tick Borne Dis. 2012;3(3):170-178. DOI: 10.1016/j.ttbdis.2012.03.003

Cech P.G, Aebi T, Abdallah M.S, Mpina M, Machunda E.B, Westerfeld N, Stoffel S.A, Zurbriggen R, Pluschke G, Tanner M, Daubenberger C, Genton B, Abdulla S. Virosome-formulated Plasmodium falciparum AMA-1 & CSP derived peptides as malaria vaccine: randomized phase 1b trial in semi-immune adults & children. PLoS One. 2011;6(7):e22273. DOI: 10.1371/journal.pone.0022273

Huber C.A, McOdimba F, Pflueger V, Daubenberger C.A, Revathi G. Characterization of invasive and colonizing isolates of Streptococcus agalactiae in East African adults. J Clin Microbiol. 2011;49(10):3652-3655. DOI: 10.1128/JCM.01288-11

Daubenberger C.A. Gene-expression analysis for prediction of RTS,S-induced protection in humans. Expert Rev Vaccines. 2010;9(5):465-469. DOI: 10.1586/erv.10.35

Genton B, Aebi T, Abdallah M.S, Maximillian M, Machunda E.B, Mbaga T.A, Mpuruti J, Cech P, Ley B, Tanner M, Westerfeld N, Stoffel S, Zurbriggen R, Pluschke G, Daubenberger C, Abdulla S. A phase 1b double-blind randomized controlled age-deescalating trial of two virosome formulated anti-malaria vaccine components administered in combination to healthy semiimmune Tanzanian adults and children. Am J Trop Med Hyg, 2010;83(5 Suppl. 1):292-293

Kopp N, Diaz D, Amacker M, Odongo D.O, Beier K, Nitsch C, Bishop R.P, Daubenberger C.A. Identification of a synthetic peptide inducing cross-reactive antibodies binding to Rhipicephalus (Boophilus) decoloratus, Rhipicephalus (Boophilus) microplus, Hyalomma anatolicum anatolicum and Rhipicephalus appendiculatus<. Vaccine. 2010;28(1):261-269. DOI: 10.1016/j.vaccine.2009.09.085