Publications

Holzschuh A, Lerch A, Fakih B.S, Aliy S.M, Ali M.H, Ali M.A, Bruzzese D.J, Yukich J, Hetzel M.W, Koepfli C. Using a mobile nanopore sequencing lab for end-to-end genomic surveillance of Plasmodium falciparum: a feasibility study. PLOS Glob Public Health. 2024;4(2):e0002743. DOI: 10.1371/journal.pgph.0002743

Das A.M, Hetzel M.W, Yukich J.O, Stuck L, Fakih B.S, Al-mafazy A.H, Ali A, Chitnis N. Modelling the impact of interventions on imported, introduced and indigenous malaria infections in Zanzibar, Tanzania. Nat Commun. 2023;14:2750. DOI: 10.1038/s41467-023-38379-8

Fakih B.S, Holzschuh A, Ross A, Stuck L, Abdul R, Al-mafazy A.H, Irema I, Mbena A, Thawer S.G, Shija S.J, Aliy S.M, Ali A, Fink G, Yukich J, Hetzel M.W. Risk of imported malaria infections in Zanzibar: a cross-sectional study. Infect Dis Poverty. 2023;12:80. DOI: 10.1186/s40249-023-01129-5

Holzschuh A, Lerch A, Gerlovina I, Fakih B.S, Al-mafazy A.H, Reaves E.J, Ali A, Abbas F, Ali M.H, Ali M.A, Hetzel M.W, Yukich J, Koepfli C. Multiplexed ddPCR-amplicon sequencing reveals isolated Plasmodium falciparum populations amenable to local elimination in Zanzibar, Tanzania. Nat Commun. 2023;14:3699. DOI: 10.1038/s41467-023-39417-1

Das A.M, Hetzel M.W, Yukich J.O, Stuck L, Fakih B.S, Al-mafazy A.H, Ali A, Chitnis N. The impact of reactive case detection on malaria transmission in Zanzibar in the presence of human mobility. Epidemics. 2022;41:100639. DOI: 10.1016/j.epidem.2022.100639

Vera-Arias C.A, Holzschuh A, Oduma C.O, Badu K, Abdul-Hakim M, Yukich J, Hetzel M.W, Fakih B.S, Ali A, Ferreira M.U, Ladeia-Andrade S, Sáenz F.E, Afrane Y, Zemene E, Yewhalaw D, Kazura J.W, Yan G, Koepfli C. High-throughput Plasmodium falciparum hrp2 and hrp3 gene deletion typing by digital PCR to monitor malaria rapid diagnostic test efficacy. eLife. 2022;11:e72083. DOI: 10.7554/eLife.72083